3DT0 image
Deposition Date 2008-07-14
Release Date 2009-06-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3DT0
Keywords:
Hydrolase/Hydrolase Inhibitor
Title:
Understanding Thrombin Inhibition
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.40 Å
R-Value Free:
0.28
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
3DT0 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin heavy chain
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hirudin variant-1
Chain IDs:C (auth: I)
Chain Length:11
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P01050
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin light chain
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR O-SULFO-L-TYROSINE
Ligand Molecules
16U
NA
Peptide-like Molecules
PRD_000590
Primary Citation
Understanding Thrombin Inhibition
To be Published ? ? ? (?)
Primary Citation of related structures
2ZDA
2ZC9
2ZNK
2ZFP
2ZGX
2ZHQ