3DPR image
Deposition Date 2008-07-09
Release Date 2009-04-07
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3DPR
Keywords:
Title:
Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Human rhinovirus 2 (Taxon ID: 12130)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.44
R-Value Work:
0.42
R-Value Observed:
0.42
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP1
Chain IDs:A
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP2
Chain IDs:B
Chain Length:261
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP3
Chain IDs:C
Chain Length:237
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP4
Chain IDs:D
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LDL-receptor class A 3
Gene (Uniprot):VLDLR
Chain IDs:E
Chain Length:39
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition
Febs Lett. 583 235 240 (2009)
PMID: 19073182 DOI: 10.1016/j.febslet.2008.12.014

Abstact

X-ray structures of human rhinovirus 2 (HRV2) in complex with soluble very-low-density lipoprotein receptors encompassing modules 1, 2, and 3 (V123) and five V3 modules arranged in tandem (V33333) demonstrates multi-modular binding around the virion's five-fold axes. Occupancy was 60% for V123 and 100% for V33333 explaining the high-avidity of the interaction. Surface potentials of 3D-models of all minor group HRVs and K-type major group HRVs were compared; hydrophobic interactions between a conserved lysine in the viruses and a tryptophan in the receptor modules together with coulombic attraction via diffuse opposite surface potentials determine minor group HRV receptor specificity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback