3DP5 image
Deposition Date 2008-07-07
Release Date 2008-09-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3DP5
Title:
Crystal structure of Geobacter sulfurreducens OmcF with N-terminal Strep-tag II
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c family protein
Gene (Uniprot):omcF
Chain IDs:A
Chain Length:99
Number of Molecules:1
Biological Source:Geobacter sulfurreducens
Primary Citation
Crystal packing of the c(6)-type cytochrome OmcF from Geobacter sulfurreducens is mediated by an N-terminal Strep-tag II
ACTA CRYSTALLOGR.,SECT.D 64 919 926 (2008)
PMID: 18703839 DOI: 10.1107/S0907444908021306

Abstact

The putative outer membrane c-type cytochrome OmcF from Geobacter sulfurreducens contains a single haem group and shows homology to soluble cytochromes c(6), a class of electron-transfer proteins that are typically found in cyanobacterial photosynthetic electron-transfer chains. OmcF was overexpressed heterologously in Escherichia coli as an N-terminal Strep-tag II fusion protein and isolated using streptactin-affinity chromatography followed by size-exclusion chromatography. The structure was solved by Fe SAD using data collected to a resolution of 1.86 A on a rotating copper-anode X-ray generator. In the crystal, packing interactions in one dimension were exclusively mediated through the Strep-tag II sequence. The tag and linker regions were in contact with three further monomers of OmcF, leading to a well defined electron-density map for this engineered and secondary-structure-free region of the molecule.

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