3DMI image
Deposition Date 2008-07-01
Release Date 2009-03-17
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3DMI
Keywords:
ELECTRON TRANSPORT
Title:
Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution
Biological Source:
Source Organism:
Phaeodactylum tricornutum (Taxon ID: 2850)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.50 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 2 3
3DMI validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:cytochrome c6
Gene (Uniprot):pet J
Chain IDs:A
Chain Length:88
Number of Molecules:1
Biological Source:Phaeodactylum tricornutum
UniProt ID:Q8GTB5 Pfam ID:PF13442
Ligand Molecules
HEC
MG
Primary Citation
Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution.
Biosci.Biotechnol.Biochem. 73 189 191 (2009)
PMID: 19129656 DOI: 10.1271/bbb.80472

Abstact

We determined for the first time the crystal structure of diatom cytochrome c(6) from Phaeodactylum tricornutum at 1.5 A resolution. The overall structure of the protein was classified as a class I c-type cytochrome. The physicochemical properties of the protein were examined by denaturation with guanidine hydrochloride and urea, and compared with those of other algal cytochrome c(6).

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Primary Citation of related structures
3DMI