3DD9 image
Deposition Date 2008-06-05
Release Date 2009-06-09
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3DD9
Title:
Structure of DocH66Y dimer
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Death on curing protein
Gene (Uniprot):doc
Mutations:H66Y, E126D
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:135
Number of Molecules:8
Biological Source:Enterobacteria phage P1
Primary Citation
The intrinsically disordered domain of the antitoxin Phd chaperones the toxin Doc against irreversible inactivation and misfolding
J. Biol. Chem. 289 34013 34023 (2014)
PMID: 25326388 DOI: 10.1074/jbc.M114.572396

Abstact

The toxin Doc from the phd/doc toxin-antitoxin module targets the cellular translation machinery and is inhibited by its antitoxin partner Phd. Here we show that Phd also functions as a chaperone, keeping Doc in an active, correctly folded conformation. In the absence of Phd, Doc exists in a relatively expanded state that is prone to dimerization through domain swapping with its active site loop acting as hinge region. The domain-swapped dimer is not capable of arresting protein synthesis in vitro, whereas the Doc monomer is. Upon binding to Phd, Doc becomes more compact and is secured in its monomeric state with a neutralized active site.

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Primary Citation of related structures