ISDA

Deposition Date 2008-06-04

Release Date 2008-08-19

Last Version Date 2024-10-30

Entry Detail

PDB ID:

3DCV

Keywords:

TRANSFERASE

Title:

Crystal structure of human Pim1 kinase complexed with 4-(4-hydroxy-3-methyl-phenyl)-6-phenylpyrimidin-2(1H)-one

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.23

R-Value Work:

0.17

R-Value Observed:

0.18

Space Group:

P 65

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Proto-oncogene serine/threonine-protein kinase Pim-1
Gene (Uniprot):PIM1
Chain IDs:A
Chain Length:328
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P11309 Pfam ID:PF00069 EC:2.7.11.1

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
SEP	A	SER	PHOSPHOSERINE

Ligand Molecules

55E

Primary Citation

4-(1H-indazol-5-yl)-6-phenylpyrimidin-2(1H)-one analogs as potent CDC7 inhibitors.

Shafer, C.M, Lindvall, M, Bellamacina, C, Gesner, T.G, Yabannavar, A, Jia, W, Lin, S, Walter, A.Show

Bioorg.Med.Chem.Lett. 18 4482 4485 (2008)

PMID: 18672368 DOI: 10.1016/j.bmcl.2008.07.061

Abstact

A series of 4-(4-hydroxyphenyl)-6-phenylpyrimidin-2(1H)-ones were identified by HTS as inhibitors of CDC7. Molecular modeling and medicinal chemistry techniques were employed to explore the SAR for this series with a focus on removing potential metabolic liabilities and improving cellular potency.

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Protein

Chemical

Disease

Primary Citation of related structures