3DCG image
Deposition Date 2008-06-03
Release Date 2008-07-08
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3DCG
Title:
Crystal Structure of the HIV Vif BC-box in Complex with Human ElonginB and ElonginC
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 2
Gene (Uniprot):ELOB
Chain IDs:A, C
Chain Length:118
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 1
Gene (Uniprot):ELOC
Chain IDs:B, D
Chain Length:97
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Virion infectivity factor
Gene (Uniprot):vif
Chain IDs:E, F
Chain Length:39
Number of Molecules:2
Biological Source:Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Primary Citation
Structural insight into the human immunodeficiency virus Vif SOCS box and its role in human E3 ubiquitin ligase assembly
J.Virol. 82 8656 8663 (2008)
PMID: 18562529 DOI: 10.1128/JVI.00767-08

Abstact

Human immunodeficiency virus (HIV) virion infectivity factor (Vif) causes the proteasome-mediated destruction of human antiviral protein APOBEC3G by tethering it to a cellular E3 ubiquitin ligase composed of ElonginB, ElonginC, Cullin5, and Rbx2. It has been proposed that HIV Vif hijacks the E3 ligase through two regions within its C-terminal domain: a BC box region that interacts with ElonginC and a novel zinc finger motif that interacts with Cullin5. We have determined the crystal structure of the HIV Vif BC box in complex with human ElonginB and ElonginC. This complex presents direct structural evidence of the recruitment of a human ubiquitin ligase by a viral BC box protein that mimics the conserved interactions of cellular ubiquitin ligases. We further mutated conserved hydrophobic residues in a region downstream of the Vif BC box. These mutations demonstrate that this region, the Vif Cullin box, composes a third E3-ligase recruiting site critical for interaction between Vif and Cullin5. Furthermore, our homology modeling reveals that the Vif Cullin box and zinc finger motif may be positioned adjacent to the N terminus of Cullin5 for interaction with loop regions in the first cullin repeat of Cullin5.

Legend

Protein

Chemical

Disease

Primary Citation of related structures