3D8M image
Deposition Date 2008-05-23
Release Date 2009-04-14
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3D8M
Title:
Crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies TP901-1 and p2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Baseplate protein, Receptor binding protein
Gene (Uniprot):bpp
Chain IDs:A
Chain Length:165
Number of Molecules:1
Biological Source:Lactococcus phage TP901-1, Lactococcus phage p2
Ligand Molecules
Primary Citation
Crystal structure of a chimeric receptor binding protein constructed from two lactococcal phages
J.Bacteriol. 191 3220 3225 (2009)
PMID: 19286807 DOI: 10.1128/JB.01637-08

Abstact

Lactococcus lactis, a gram-positive bacterium widely used by the dairy industry to manufacture cheeses, is subject to infection by a diverse population of virulent phages. We have previously determined the structures of three receptor binding proteins (RBPs) from lactococcal phages TP901-1, p2, and bIL170, each of them having a distinct host range. Virulent phages p2 and bIL170 are classified within the 936 group, while the temperate phage TP901-1 is a member of the genetically distinct P335 polythetic group. These RBPs comprise three domains: the N-terminal domain, binding to the virion particle; a beta-helical linker domain; and the C-terminal domain, bearing the receptor binding site used for host recognition. Here, we have designed, expressed, and determined the structure of an RBP chimera in which the N-terminal and linker RBP domains of phage TP901-1 (P335) are fused to the C-terminal RBP domain of phage p2 (936). This chimera exhibits a stable structure that closely resembles the parental structures, while a slight displacement of the linker made RBP domain adaptation efficient. The receptor binding site is structurally indistinguishable from that of native p2 RBP and binds glycerol with excellent affinity.

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Primary Citation of related structures