3D8A image
Entry Detail
PDB ID:
3D8A
Title:
Co-crystal structure of TraM-TraD complex.
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2008-05-22
Release Date:
2008-09-09
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Relaxosome protein TraM
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:70
Number of Molecules:8
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:Protein traD
Chain IDs:I (auth: S), J (auth: T), K (auth: U), L (auth: V), M (auth: W), N (auth: X), O (auth: Y), P (auth: Z)
Chain Length:10
Number of Molecules:8
Biological Source:Escherichia coli K12
Primary Citation
Structural basis of specific TraD-TraM recognition during F plasmid-mediated bacterial conjugation.
Mol.Microbiol. 70 89 99 (2008)
PMID: 18717787 DOI: 10.1111/j.1365-2958.2008.06391.x

Abstact

F plasmid-mediated bacterial conjugation requires interactions between a relaxosome component, TraM, and the coupling protein TraD, a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. Here we present the crystal structure of the C-terminal tail of TraD bound to the TraM tetramerization domain, the first structural evidence of relaxosome-coupling protein interactions. The structure reveals the TraD C-terminal peptide bound to each of four symmetry-related grooves on the surface of the TraM tetramer. Extensive protein-protein interactions were observed between the two proteins. Mutational analysis indicates that these interactions are specific and required for efficient F conjugation in vivo. Our results suggest that specific interactions between the C-terminal tail of TraD and the TraM tetramerization domain might lead to more generalized interactions that stabilize the relaxosome-coupling protein complex in preparation for conjugative DNA transfer.

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