3D72 image
Deposition Date 2008-05-20
Release Date 2008-06-17
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3D72
Title:
1.65 Angstrom crystal structure of the Cys71Val variant in the fungal photoreceptor VVD
Biological Source:
Source Organism:
Neurospora crassa (Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.26
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vivid PAS protein VVD
Mutations:c71v
Chain IDs:A, B
Chain Length:149
Number of Molecules:2
Biological Source:Neurospora crassa
Ligand Molecules
Primary Citation
Light activation of the LOV protein vivid generates a rapidly exchanging dimer.
Biochemistry 47 7012 7019 (2008)
PMID: 18553928 DOI: 10.1021/bi8007017

Abstact

The fungal photoreceptor Vivid (VVD) plays an important role in the adaptation of blue-light responses in Neurospora crassa. VVD, an FAD-binding LOV (light, oxygen, voltage) protein, couples light-induced cysteinyl adduct formation at the flavin ring to conformational changes in the N-terminal cap (Ncap) of the VVD PAS domain. Size-exclusion chromatography (SEC), equilibrium ultracentrifugation, and static and dynamic light scattering show that these conformational changes generate a rapidly exchanging VVD dimer, with an expanded hydrodynamic radius. A three-residue N-terminal beta-turn that assumes two different conformations in a crystal structure of a VVD C71V variant is essential for light-state dimerization. Residue substitutions at a critical hinge between the Ncap and PAS core can inhibit or enhance dimerization, whereas a Tyr to Trp substitution at the Ncap-PAS interface stabilizes the light-state dimer. Cross-linking through engineered disulfides indicates that the light-state dimer differs considerably from the dark-state dimer found in VVD crystal structures. These results verify the role of Ncap conformational changes in gating the photic response of N. crassa and indicate that LOV-LOV homo- or heterodimerization may be a mechanism for regulating light-activated gene expression.

Legend

Protein

Chemical

Disease

Primary Citation of related structures