3D5K image
Entry Detail
PDB ID:
3D5K
Title:
Crystal structure of the OprM channel in a non-symmetrical space group
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-05-16
Release Date:
2009-06-02
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Outer membrane protein oprM
Chain IDs:A, B, C
Chain Length:474
Number of Molecules:3
Biological Source:Pseudomonas aeruginosa
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SCY A CYS S-ACETYL-CYSTEINE
Primary Citation
Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel.
Structure 18 507 517 (2010)
PMID: 20399187 DOI: 10.1016/j.str.2010.01.018

Abstact

Originally described in bacteria, drug transporters are now recognized as major determinants in antibiotics resistance. For Gram-negative bacteria, the reversible assembly consisting of an inner membrane protein responsible for the active transport, a periplasmic protein, and an exit outer membrane channel achieves transport. The opening of the outer membrane protein OprM from Pseudomonas aeruginosa was modeled through normal mode analysis starting from a new X-ray structure solved at 2.4 A resolution in P2(1)2(1)2(1) space group. The three monomers are not linked by internal crystallographic symmetries highlighting the possible functional differences. This structure is closed at both ends, but modeling allowed for an opening that is not reduced to the classically proposed "iris-like mechanism."

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