3D3C image
Deposition Date 2008-05-09
Release Date 2009-01-13
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3D3C
Keywords:
Title:
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N utilization substance protein B
Gene (Uniprot):nusB
Mutations:K2E
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:141
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Gene (Uniprot):rpsJ
Mutations:A86D
Chain IDs:B (auth: J), D (auth: K), F (auth: L)
Chain Length:87
Number of Molecules:3
Biological Source:Escherichia coli
Primary Citation
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Mol.Cell 32 791 802 (2008)
PMID: 19111659 DOI: 10.1016/j.molcel.2008.10.028

Abstact

Protein S10 is a component of the 30S ribosomal subunit and participates together with NusB protein in processive transcription antitermination. The molecular mechanisms by which S10 can act as a translation or a transcription factor are not understood. We used complementation assays and recombineering to delineate regions of S10 dispensable for antitermination, and determined the crystal structure of a transcriptionally active NusB-S10 complex. In this complex, S10 adopts the same fold as in the 30S subunit and is blocked from simultaneous association with the ribosome. Mass spectrometric mapping of UV-induced crosslinks revealed that the NusB-S10 complex presents an intermolecular, composite, and contiguous binding surface for RNAs containing BoxA antitermination signals. Furthermore, S10 overproduction complemented a nusB null phenotype. These data demonstrate that S10 and NusB together form a BoxA-binding module, that NusB facilitates entry of S10 into the transcription machinery, and that S10 represents a central hub in processive antitermination.

Legend

Protein

Chemical

Disease

Primary Citation of related structures