3D3B image
Deposition Date 2008-05-09
Release Date 2009-01-13
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3D3B
Keywords:
Title:
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N utilization substance protein B
Gene (Uniprot):nusB
Mutations:K2E
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Gene (Uniprot):rpsJ
Chain IDs:B (auth: J)
Chain Length:87
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Mol.Cell 32 791 802 (2008)
PMID: 19111659 DOI: 10.1016/j.molcel.2008.10.028

Abstact

Protein S10 is a component of the 30S ribosomal subunit and participates together with NusB protein in processive transcription antitermination. The molecular mechanisms by which S10 can act as a translation or a transcription factor are not understood. We used complementation assays and recombineering to delineate regions of S10 dispensable for antitermination, and determined the crystal structure of a transcriptionally active NusB-S10 complex. In this complex, S10 adopts the same fold as in the 30S subunit and is blocked from simultaneous association with the ribosome. Mass spectrometric mapping of UV-induced crosslinks revealed that the NusB-S10 complex presents an intermolecular, composite, and contiguous binding surface for RNAs containing BoxA antitermination signals. Furthermore, S10 overproduction complemented a nusB null phenotype. These data demonstrate that S10 and NusB together form a BoxA-binding module, that NusB facilitates entry of S10 into the transcription machinery, and that S10 represents a central hub in processive antitermination.

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Primary Citation of related structures