3D36 image
Deposition Date 2008-05-09
Release Date 2009-01-13
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3D36
Title:
How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.21
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sporulation kinase B
Chain IDs:A, B
Chain Length:244
Number of Molecules:2
Biological Source:Geobacillus stearothermophilus
Polymer Type:polypeptide(L)
Molecule:Sporulation kinase inhibitor Sda
Chain IDs:C
Chain Length:46
Number of Molecules:1
Biological Source:Geobacillus stearothermophilus
Primary Citation
How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda
J.Mol.Biol. 386 163 177 (2009)
PMID: 19101565 DOI: 10.1016/j.jmb.2008.12.006

Abstact

Entry to sporulation in bacilli is governed by a histidine kinase phosphorelay, a variation of the predominant signal transduction mechanism in prokaryotes. Sda directly inhibits sporulation histidine kinases in response to DNA damage and replication defects. We determined a 2.0-A-resolution X-ray crystal structure of the intact cytoplasmic catalytic core [comprising the dimerization and histidine phosphotransfer domain (DHp domain), connected to the ATP binding catalytic domain] of the Geobacillus stearothermophilus sporulation kinase KinB complexed with Sda. Structural and biochemical analyses reveal that Sda binds to the base of the DHp domain and prevents molecular transactions with the DHp domain to which it is bound by acting as a simple molecular barricade. Sda acts to sterically block communication between the catalytic domain and the DHp domain, which is required for autophosphorylation, as well as to sterically block communication between the response regulator Spo0F and the DHp domain, which is required for phosphotransfer and phosphatase activities.

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