3D2H image
Entry Detail
PDB ID:
3D2H
Keywords:
Title:
Structure of berberine bridge enzyme from Eschscholzia californica, monoclinic crystal form
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-05-08
Release Date:
2008-10-28
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:berberine bridge-forming enzyme
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Eschscholzia californica
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol. 4 739 741 (2008)
PMID: 18953357 DOI: 10.1038/nchembio.123

Abstact

Berberine bridge enzyme catalyzes the conversion of (S)-reticuline to (S)-scoulerine by formation of a carbon-carbon bond between the N-methyl group and the phenolic ring. We elucidated the structure of berberine bridge enzyme from Eschscholzia californica and determined the kinetic rates for three active site protein variants. Here we propose a catalytic mechanism combining base-catalyzed proton abstraction with concerted carbon-carbon coupling accompanied by hydride transfer from the N-methyl group to the N5 atom of the FAD cofactor.

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Primary Citation of related structures