3D2D image
Deposition Date 2008-05-08
Release Date 2008-10-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3D2D
Keywords:
Title:
Structure of berberine bridge enzyme in complex with (S)-reticuline
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:berberine bridge-forming enzyme
Gene (Uniprot):BBE1
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Eschscholzia californica
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol. 4 739 741 (2008)
PMID: 18953357 DOI: 10.1038/nchembio.123

Abstact

Berberine bridge enzyme catalyzes the conversion of (S)-reticuline to (S)-scoulerine by formation of a carbon-carbon bond between the N-methyl group and the phenolic ring. We elucidated the structure of berberine bridge enzyme from Eschscholzia californica and determined the kinetic rates for three active site protein variants. Here we propose a catalytic mechanism combining base-catalyzed proton abstraction with concerted carbon-carbon coupling accompanied by hydride transfer from the N-methyl group to the N5 atom of the FAD cofactor.

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Primary Citation of related structures