3CX2 image
Deposition Date 2008-04-23
Release Date 2008-07-01
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3CX2
Title:
Crystal structure of the C1 domain of cardiac isoform of myosin binding protein-C at 1.3A
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.20
R-Value Observed:
0.16
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Myosin-binding protein C, cardiac-type
Gene (Uniprot):MYBPC3
Chain IDs:A
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
An investigation into the protonation states of the C1 domain of cardiac myosin-binding protein C
Acta Crystallogr.,Sect.D 64 658 664 (2008)
PMID: 18560154 DOI: 10.1107/S0907444908008792

Abstact

Myosin-binding protein C (MyBP-C) is a myofibril-associated protein found in cardiac and skeletal muscle. The cardiac isoform (cMyBP-C) is subject to reversible phosphorylation and the surface-charge state of the protein is of keen interest with regard to understanding the inter-protein interactions that are implicated in its function. Diffraction data from the C1 domain of cMyBP-C were extended to 1.30 A resolution, where the <I/sigma(I)> of the diffraction data crosses 2.0, using intense synchrotron radiation. The protonation-state determinations were not above 2sigma (the best was 1.81sigma) and therefore an extrapolation is given, based on 100% data completeness and the average DPI, that a 3sigma determination could be possible if X-ray data could be measured to 1.02 A resolution. This might be possible via improved crystallization or multiple sample evaluation, e.g. using robotics or a yet more intense/collimated X-ray beam or combinations thereof. An alternative would be neutron protein crystallography at 2 A resolution, where it is estimated that for the unit-cell volume of the cMyBP-C C1 domain crystal a crystal volume of 0.10 mm3 would be needed with fully deuterated protein on LADI III. These efforts would optimally be combined in a joint X-ray and neutron model refinement.

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