3CWM image
Entry Detail
PDB ID:
3CWM
Title:
Crystal structure of alpha-1-antitrypsin complexed with citrate
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-04-22
Release Date:
2008-09-23
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alpha-1-antitrypsin
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSD A CYS 3-SULFINOALANINE
Ligand Molecules
Primary Citation
Preventing serpin aggregation: The molecular mechanism of citrate action upon antitrypsin unfolding.
Protein Sci. 17 2127 2133 (2008)
PMID: 18780818 DOI: 10.1110/ps.037234.108

Abstact

The aggregation of antitrypsin into polymers is one of the causes of neonatal hepatitis, cirrhosis, and emphysema. A similar reaction resulting in disease can occur in other human serpins, and collectively they are known as the serpinopathies. One possible therapeutic strategy involves inhibiting the conformational changes involved in antitrypsin aggregation. The citrate ion has previously been shown to prevent antitrypsin aggregation and maintain the protein in an active conformation; its mechanism of action, however, is unknown. Here we demonstrate that the citrate ion prevents the initial misfolding of the native state to a polymerogenic intermediate in a concentration-dependent manner. Furthermore, we have solved the crystal structure of citrate bound to antitrypsin and show that a single citrate molecule binds in a pocket between the A and B beta-sheets, a region known to be important in maintaining antitrypsin stability.

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Primary Citation of related structures