3CVZ image
Deposition Date 2008-04-20
Release Date 2009-03-17
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3CVZ
Title:
Structural insights into the molecular organization of the S-layer from Clostridium difficile
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:S-layer protein
Chain IDs:A, B, C, D
Chain Length:273
Number of Molecules:4
Biological Source:Clostridium difficile
Primary Citation
Structural insights into the molecular organization of the S-layer from Clostridium difficile
Mol.Microbiol. 71 1308 1322 (2009)
PMID: 19183279 DOI: 10.1111/j.1365-2958.2009.06603.x

Abstact

Clostridium difficile expresses a surface layer (S-layer) which coats the surface of the bacterium and acts as an adhesin facilitating interaction of the bacterium with host enteric cells. The S-layer contains a high-molecular-weight S-layer protein (HMW SLP) and its low-molecular-weight partner protein (LMW SLP). We show that these proteins form a tightly associated non-covalent complex, the H/L complex, and we identify the regions of both proteins responsible for complex formation. The 2.4 A X-ray crystal structure of a truncated derivative of the LMW SLP reveals two domains. Domain 1 has a two-layer sandwich architecture while domain 2, predicted to orientate towards the external environment, contains a novel fold. Small-angle X-ray scattering analysis of the H/L complex shows an elongated molecule, with the two SLPs arranged 'end-to-end' interacting with each other through a small contact area. Alignment of LMW SLPs, which exhibit high sequence diversity, reveals a core of conserved residues that could reflect functional conservation, while allowing for immune evasion through sequence variation. These structures are the first described for the S-layer of a bacterial pathogen, and provide insights into the assembly and biogenesis of the S-layer.

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