3COO image
Deposition Date 2008-03-28
Release Date 2008-08-26
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3COO
Keywords:
Title:
The crystal structure of Reelin-N domain of F-spondin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: )
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spondin-1
Gene (Uniprot):SPON1
Chain IDs:A, B
Chain Length:180
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The crystal structure of the heparin-binding reelin-N domain of f-spondin.
J.Mol.Biol. 381 1213 1223 (2008)
PMID: 18602404 DOI: 10.1016/j.jmb.2008.06.045

Abstact

The extracellular matrix protein F-spondin mediates axon guidance during neuronal development. Its N-terminal domain, termed the reelin-N domain, is conserved in F-spondins, reelins, and other extracellular matrix proteins. In this study, a recombinant human reelin-N domain has been expressed, purified, and shown to bind heparin. The crystal structure of the reelin-N domain resolved to 2.0 A reveals a variant immunoglobulin-like fold and potential heparin-binding sites. Substantial conformational variations even in secondary structure are observed between the two chemically identical reelin-N domains in one crystallographic asymmetric unit. The variations may result from extensive, highly specific interactions across the interface of the two reelin-N domains. The calculated values of buried surface area and the interface's shape complementarity are consistent with the formation of a weak dimer. The homophilic asymmetric dimer can potentially offer advantages in binding to ligands such as glycosaminoglycans, which may, in turn, bridge the two reelin-N domains and stabilize the dimer.

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