3CK6 image
Deposition Date 2008-03-14
Release Date 2008-03-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3CK6
Title:
Crystal structure of ZntB cytoplasmic domain from Vibrio parahaemolyticus RIMD 2210633
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative membrane transport protein
Gene (Uniprot):zntB
Mutagens:S42G
Chain IDs:A, B, C, D, E
Chain Length:252
Number of Molecules:5
Biological Source:Vibrio parahaemolyticus RIMD 2210633
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structure and electrostatic property of cytoplasmic domain of ZntB transporter.
Protein Sci. 18 2043 2052 (2009)
PMID: 19653298 DOI: 10.1002/pro.215

Abstact

ZntB is the distant homolog of CorA Mg(2+) transporter within the metal ion transporter superfamily. It was early reported that the ZntB from Salmonella typhimurium facilitated efflux of Zn(2+) and Cd(2+), but not Mg(2+). Here, we report the 1.90 A crystal structure of the intracellular domain of ZntB from Vibrio parahemolyticus. The domain forms a funnel-shaped homopentamer that is similar to the full-length CorA from Thermatoga maritima, but differs from two previously reported dimeric structures of truncated CorA intracellular domains. However, no Zn(2+) or Cd(2+) binding sites were identified in the high-resolution structure. Instead, 25 well-defined Cl(-) ions were observed and some of these binding sites are highly conserved within the ZntB family. Continuum electrostatics calculations suggest that the central pore of the funnel is highly attractive for cations, especially divalents. The presence of the bound Cl(-) ions increases the stability of cations along the pore suggesting they could be important in enhancing cation transport.

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Primary Citation of related structures
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