3CJJ image
Deposition Date 2008-03-13
Release Date 2009-03-24
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3CJJ
Title:
Crystal structure of human rage ligand-binding domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Advanced glycosylation end product-specific receptor
Gene (Uniprot):AGER
Chain IDs:A
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis for ligand recognition and activation of RAGE.
Structure 18 1342 1352 (2010)
PMID: 20947022 DOI: 10.1016/j.str.2010.05.017

Abstact

The receptor for advanced glycation end products (RAGE) is a pattern recognition receptor involved in inflammatory processes and is associated with diabetic complications, tumor outgrowth, and neurodegenerative disorders. RAGE induces cellular signaling events upon binding of a variety of ligands, such as glycated proteins, amyloid-β, HMGB1, and S100 proteins. The X-ray crystal structure of the VC1 ligand-binding region of the human RAGE ectodomain was determined at 1.85 Å resolution. The VC1 ligand-binding surface was mapped onto the structure from titrations with S100B monitored by heteronuclear NMR spectroscopy. These NMR chemical shift perturbations were used as input for restrained docking calculations to generate a model for the VC1-S100B complex. Together, the arrangement of VC1 molecules in the crystal and complementary biochemical studies suggest a role for self-association in RAGE function. Our results enhance understanding of the functional outcomes of S100 protein binding to RAGE and provide insight into mechanistic models for how the receptor is activated.

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