ISDA

Deposition Date 2008-03-12

Release Date 2008-10-07

Last Version Date 2024-10-30

Entry Detail

PDB ID:

3CJG

Keywords:

TRANSFERASE

Title:

Crystal structure of VEGFR2 in complex with a 3,4,5-trimethoxy aniline containing pyrimidine

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: )

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.25 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Vascular endothelial growth factor receptor 2
Gene (Uniprot):KDR
Chain IDs:A
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P35968 Pfam ID:PF07714 EC:2.7.10.1

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
CSO	A	CYS	S-HYDROXYCYSTEINE

Ligand Molecules

KIM

SO4

Primary Citation

Discovery of 5-[[4-[(2,3-dimethyl-2H-indazol-6-yl)methylamino]-2-pyrimidinyl]amino]-2-methyl-benzenesulfonamide (Pazopanib), a novel and potent vascular endothelial growth factor receptor inhibitor.

Harris, P.A, Boloor, A, Cheung, M, Kumar, R, Crosby, R.M, Davis-Ward, R.G, Epperly, A.H, Hinkle, K.W, Hunter, R.N, Johnson, J.H, Knick, V.B, Laudeman, C.P, Luttrell, D.K, Mook, R.A, Nolte, R.T, Rudolph, S.K, Szewczyk, J.R, Truesdale, A.T, Veal, J.M, Wang, L, Stafford, J.A.Show

J.Med.Chem. 51 4632 4640 (2008)

PMID: 18620382 DOI: 10.1021/jm800566m

Abstact

Inhibition of the vascular endothelial growth factor (VEGF) signaling pathway has emerged as one of the most promising new approaches for cancer therapy. We describe herein the key steps starting from an initial screening hit leading to the discovery of pazopanib, N(4)-(2,3-dimethyl-2H-indazol-6-yl)-N(4)-methyl-N(2)-(4-methyl-3-sulfonamidophenyl)-2,4-pyrimidinediamine, a potent pan-VEGF receptor (VEGFR) inhibitor under clinical development for renal-cell cancer and other solid tumors.

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Primary Citation of related structures