3CF6 image
Deposition Date 2008-03-02
Release Date 2008-07-29
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3CF6
Title:
Structure of Epac2 in complex with cyclic-AMP and Rap
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Rap guanine nucleotide exchange factor (GEF) 4
Chain IDs:A (auth: E)
Chain Length:694
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rap-1b
Gene (Uniprot):RAP1B
Chain IDs:B (auth: R)
Chain Length:167
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of Epac2 in complex with a cyclic AMP analogue and RAP1B
Nature 455 124 127 (2008)
PMID: 18660803 DOI: 10.1038/nature07187

Abstact

Epac proteins are activated by binding of the second messenger cAMP and then act as guanine nucleotide exchange factors for Rap proteins. The Epac proteins are involved in the regulation of cell adhesion and insulin secretion. Here we have determined the structure of Epac2 in complex with a cAMP analogue (Sp-cAMPS) and RAP1B by X-ray crystallography and single particle electron microscopy. The structure represents the cAMP activated state of the Epac2 protein with the RAP1B protein trapped in the course of the exchange reaction. Comparison with the inactive conformation reveals that cAMP binding causes conformational changes that allow the cyclic nucleotide binding domain to swing from a position blocking the Rap binding site towards a docking site at the Ras exchange motif domain.

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Primary Citation of related structures
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