3C8P image
Deposition Date 2008-02-13
Release Date 2008-06-17
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3C8P
Keywords:
Title:
X-ray structure of Viscotoxin A1 from Viscum album L.
Biological Source:
Source Organism:
Viscum album (Taxon ID: 3972)
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.19
R-Value Observed:
0.15
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Viscotoxin A1
Chain IDs:A, B
Chain Length:46
Number of Molecules:2
Biological Source:Viscum album
Primary Citation
Structures of viscotoxins A1 and B2 from European mistletoe solved using native data alone
Acta Crystallogr.,Sect.D 64 985 992 (2008)
PMID: 18703848 DOI: 10.1107/S0907444908022646

Abstact

Crystals of the cytotoxic thionin proteins viscotoxins A1 and B2 extracted from mistletoe diffracted to high resolution (1.25 and 1.05 A, respectively) and are excellent candidates for testing crystallographic methods. Ab initio direct methods were only successful in solving the viscotoxin B2 structure, which with 861 unique non-H atoms is one of the largest unknown structures without an atom heavier than sulfur to be solved in this way, but sulfur-SAD phasing provided a convincing solution for viscotoxin A1. Both proteins form dimers in the crystal and viscotoxin B2 (net charge +4 per monomer), but not viscotoxin A1 (net charge +6), is coordinated by sulfate or phosphate anions. The viscotoxin A1 crystal has a higher solvent content than the viscotoxin B2 crystal (49% as opposed to 28%) with solvent channels along the crystallographic 4(3) axes.

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