3C60 image
Deposition Date 2008-02-01
Release Date 2008-04-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3C60
Title:
Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR YAe62
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.30
R-Value Work:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TCR YAe62 alpha chain
Chain IDs:A, E
Chain Length:199
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:TCR YAe62 beta chain
Chain IDs:B, F
Chain Length:236
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:H-2 class II histocompatibility antigen, A-B alpha chain
Gene (Uniprot):H2-Aa
Chain IDs:C, G
Chain Length:182
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)
Gene (Uniprot):H2-Ab1
Chain IDs:D, H
Chain Length:217
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Crossreactive T Cells spotlight the germline rules for alphabeta T cell-receptor interactions with MHC molecules.
Immunity 28 324 334 (2008)
PMID: 18308592 DOI: 10.1016/j.immuni.2008.01.008

Abstact

To test whether highly crossreactive alphabeta T cell receptors (TCRs) produced during limited negative selection best illustrate evolutionarily conserved interactions between TCR and major histocompatibility complex (MHC) molecules, we solved the structures of three TCRs bound to the same MHC II peptide (IAb-3K). The TCRs had similar affinities for IAb-3K but varied from noncrossreactive to extremely crossreactive with other peptides and MHCs. Crossreactivity correlated with a shrinking, increasingly hydrophobic TCR-ligand interface, involving fewer TCR amino acids. A few CDR1 and CDR2 amino acids dominated the most crossreactive TCR interface with MHC, including Vbeta8 48Y and 54E and Valpha4 29Y, arranged to impose the familiar diagonal orientation of TCR on MHC. These interactions contribute to MHC binding by other TCRs using related V regions, but not usually so dominantly. These data show that crossreactive TCRs can spotlight the evolutionarily conserved features of TCR-MHC interactions and that these interactions impose the diagonal docking of TCRs on MHC.

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Primary Citation of related structures