3C1C image
Deposition Date 2008-01-22
Release Date 2008-10-07
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3C1C
Title:
The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.29
R-Value Work:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3-like
Chain IDs:A, E
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Chain IDs:C, G
Chain Length:129
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone 2, H2bf
Gene (Uniprot):LOC116407592
Chain IDs:D, H
Chain Length:125
Number of Molecules:2
Biological Source:Xenopus (Silurana) tropicalis
Polymer Type:polydeoxyribonucleotide
Molecule:Palindromic 146bp Human Alpha satellite DNA
Chain IDs:I, J
Chain Length:146
Number of Molecules:2
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
M2L A LYS ?
Primary Citation
The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure.
Nat.Struct.Mol.Biol. 15 1122 1124 (2008)
PMID: 18794842 DOI: 10.1038/nsmb.1489

Abstact

Histone methylation regulates chromatin function dependent on the site and degree of the modification. In addition to creating binding sites for proteins, methylated lysine residues are likely to influence chromatin structure directly. Here we present crystal structures of nucleosomes reconstituted with methylated histones and investigate the folding behavior of resulting arrays. We demonstrate that dimethylation of histone H3 at lysine residue 79 locally alters the nucleosomal surface, whereas trimethylation of H4 at lysine residue 20 affects higher-order structure.

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Primary Citation of related structures