3BQP image
Deposition Date 2007-12-20
Release Date 2008-02-05
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3BQP
Title:
Crystal Structure of Human Saposin D (orthorhombic)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.23
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proactivator polypeptide
Gene (Uniprot):PSAP
Chain IDs:A, B
Chain Length:80
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structures of the human ceramide activator protein saposin D.
Acta Crystallogr.,Sect.D 64 589 594 (2008)
PMID: 18453694 DOI: 10.1107/S0907444908003120

Abstact

Saposin D is a sphingolipid activator protein required for the lysosomal breakdown of ceramide to a fatty acid and sphingosine by acid ceramidase. The crystal structure of saposin D has been determined in two different crystal forms, resulting in a total of six crystallographically independent views of this small 80-amino-acid protein. All of the structures are highly similar and reveal the monomeric form of the saposin fold previously seen in the crystal structures of saposins A and C. Saposin D is slightly more compact than the related saposins A and C owing to a slight repositioning of the 'stem' and 'hairpin' regions of the protein.

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Protein

Chemical

Disease

Primary Citation of related structures
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