3BQ7 image
Deposition Date 2007-12-19
Release Date 2008-03-25
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3BQ7
Keywords:
Title:
SAM domain of Diacylglycerol Kinase delta1 (E35G)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 32
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Diacylglycerol kinase delta
Gene (Uniprot):DGKD
Mutagens:E35G
Chain IDs:A, B, C, D, E, F
Chain Length:81
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Regulation of Enzyme Localization by Polymerization: Polymer Formation by the SAM Domain of Diacylglycerol Kinase delta1
Structure 16 380 387 (2008)
PMID: 18334213 DOI: 10.1016/j.str.2007.12.017

Abstact

The diacylglycerol kinase (DGK) enzymes function as regulators of intracellular signaling by altering the levels of the second messengers, diacylglycerol and phosphatidic acid. The DGK delta and eta isozymes possess a common protein-protein interaction module known as a sterile alpha-motif (SAM) domain. In DGK delta, SAM domain self-association inhibits the translocation of DGK delta to the plasma membrane. Here we show that DGK delta SAM forms a polymer and map the polymeric interface by a genetic selection for soluble mutants. A crystal structure reveals that DGKSAM forms helical polymers through a head-to-tail interaction similar to other SAM domain polymers. Disrupting polymerization by polymer interface mutations constitutively localizes DGK delta to the plasma membrane. Thus, polymerization of DGK delta regulates the activity of the enzyme by sequestering DGK delta in an inactive cellular location. Regulation by dynamic polymerization is an emerging theme in signal transduction.

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Primary Citation of related structures