3BQ4 image
Deposition Date 2007-12-19
Release Date 2008-06-03
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3BQ4
Keywords:
Title:
Crystal Structure of Ad35 fiber knob
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.35
R-Value Work:
0.33
R-Value Observed:
0.33
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fiber
Gene (Uniprot):L5
Chain IDs:A, B, C (auth: D), D (auth: E), E (auth: F), F (auth: G)
Chain Length:220
Number of Molecules:6
Biological Source:Human adenovirus 35
Ligand Molecules
Primary Citation
Conservation of fiber structure and CD46 usage by subgroup B2 adenoviruses
Virology 375 573 579 (2008)
PMID: 18336857 DOI: 10.1016/j.virol.2008.02.013

Abstact

Most subgroup B2 adenoviruses use CD46 as their primary receptor. Recent structural and mutagenesis studies suggested that Ad11 and Ad35 likely engage this receptor in a very similar fashion. However, no comparative studies assessing the cell-associated CD46 binding efficiencies of different Ad fibers have been performed. We solved the crystal structure of Ad35 fiber knob and constructed a model of the fiber knob complexed with CD46. Comparison of our model with that of Ad11-CD46 showed that despite a larger CD46-interacting region in the IJ loop of Ad11, the buried surface area was very similar, suggesting that both fiber knobs might exhibit similar binding. In support of this, cell based competition studies demonstrated almost identical binding efficiencies of Ad11 and Ad35 fibers to cell surface CD46. These findings shed further light on CD46 association by Ad and could impact the selection of novel Ad types for gene transfer.

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Primary Citation of related structures