3BJ9 image
Deposition Date 2007-12-03
Release Date 2008-03-04
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3BJ9
Keywords:
Title:
Crystal structure of the Surrogate Light Chain Variable Domain VpreBJ
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin iota chain, Immunoglobulin lambda-like polypeptide 1
Gene (Uniprot):VPREB1
Mutations:Ig domain of VpreB fused to J-segment of 14.1
Chain IDs:A (auth: 1)
Chain Length:116
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Engineering and characterization of a single chain surrogate light chain variable domain.
Protein Sci. 17 458 465 (2008)
PMID: 18287279 DOI: 10.1110/ps.073269808

Abstact

The surrogate light chain (SLC) is a key regulator of B cell development in the bone marrow, resulting in mature B cells that produce antibodies that are capable of interacting with antigens. The SLC comprises two noncovalently interacting proteins: VpreB and 14.1. We engineered a construct to represent the complete immunoglobulin-like domain of the SLC variable domain in a single protein chain that could be bacterially expressed. In this construct, the incomplete immunoglobulin domain of VpreB (residues 1-102) was linked to the J-segment of 14.1 (residues 40-53), which provided one beta-strand to complete the V-like domain (VpreBJ). Because VpreBJ has the interface to VH chains, but lacks the unique region of 14.1, which is important for SLC signaling, we predict that a properly folded VpreBJ would have the potential to act as a dominant negative mutant of the surrogate light chain. X-ray crystallography of VpreBJ at 2.0 A resolution showed that the engineering was successful. With its two beta-pleated sheets, packed face-to-face, the single chain VpreBJ resembles a mature light chain immunoglobulin V-domain (VL). The surface that would normally interact with the VH chain interacts with a crystallographically related VpreBJ molecule. The presence of dimeric species in solution was verified by analytical ultracentrifugation. VpreBJ is easily overexpressed in bacteria, while retaining the native conformation of an immunoglobulin domain, and thus may serve as an important reagent for future studies in B-cell development.

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