3BIM image
Deposition Date 2007-11-30
Release Date 2008-01-08
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3BIM
Title:
Crystal structure of the BCL6 BTB domain dimer in complex with the BCOR BBD corepressor peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:B-cell lymphoma 6 protein
Gene (Uniprot):BCL6
Mutations:C8Q, C67R, C84N
Chain IDs:A, C (auth: B), E (auth: C), G (auth: D), I (auth: E), K (auth: F), M (auth: G), O (auth: H)
Chain Length:127
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BCL-6 corepressor
Gene (Uniprot):BCOR
Chain IDs:B (auth: I), D (auth: J), F (auth: K), H (auth: L), J (auth: M), L (auth: N), N (auth: O), P
Chain Length:19
Number of Molecules:8
Biological Source:Homo sapiens
Primary Citation
Structure of a BCOR corepressor peptide in complex with the BCL6 BTB domain dimer.
Mol.Cell 29 384 391 (2008)
PMID: 18280243 DOI: 10.1016/j.molcel.2007.12.026

Abstact

The transcriptional corepressors BCOR, SMRT, and NCoR are known to bind competitively to the BCL6 BTB domain despite the fact that BCOR has no detectable sequence similarity to the other two corepressors. We have identified a 17 residue motif from BCOR that binds directly to the BCL6 BTB domain and determined the crystal structure of the complex to a resolution of 2.6 A. Remarkably, the BCOR BCL6 binding domain (BCOR(BBD)) peptide binds in the same BCL6 binding site as the SMRT(BBD) peptide despite the lack of any significant sequence similarity between the two peptides. Mutations of critical BCOR(BBD) residues cause the disruption of the BCL6 corepression activities of BCOR, and a BCOR(BBD) peptide blocks BCL6-mediated transcriptional repression and kills lymphoma cells.

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Primary Citation of related structures