3BEU image
Deposition Date 2007-11-20
Release Date 2008-03-11
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3BEU
Keywords:
Title:
Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.05 Å
R-Value Free:
0.14
R-Value Work:
0.11
R-Value Observed:
0.12
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Trypsin
Gene (Uniprot):sprT
Mutations:Y94F, N95T,G96K, T97E, A171S, Y172S, G173S, N174F, E175I, E180M, G186K,G187Q, V188E, I208V, Y217E, P222K, Y224K, P225Y
Chain IDs:A, B
Chain Length:224
Number of Molecules:2
Biological Source:Streptomyces griseus
Primary Citation
Engineering protein allostery: 1.05 A resolution structure and enzymatic properties of a Na+-activated trypsin.
J.Mol.Biol. 378 666 672 (2008)
PMID: 18377928 DOI: 10.1016/j.jmb.2008.03.003

Abstact

Some trypsin-like proteases are endowed with Na(+)-dependent allosteric enhancement of catalytic activity, but this important mechanism has been difficult to engineer in other members of the family. Replacement of 19 amino acids in Streptomyces griseus trypsin targeting the active site and the Na(+)-binding site were found necessary to generate efficient Na(+) activation. Remarkably, this property was linked to the acquisition of a new substrate selectivity profile similar to that of factor Xa, a Na(+)-activated protease involved in blood coagulation. The X-ray crystal structure of the mutant trypsin solved to 1.05 A resolution defines the engineered Na(+) site and active site loops in unprecedented detail. The results demonstrate that trypsin can be engineered into an efficient allosteric protease, and that Na(+) activation is interwoven with substrate selectivity in the trypsin scaffold.

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Primary Citation of related structures