3BEG image
Deposition Date 2007-11-18
Release Date 2008-04-01
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3BEG
Title:
Crystal structure of SR protein kinase 1 complexed to its substrate ASF/SF2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase SRPK1
Gene (Uniprot):SRPK1
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Splicing factor, arginine/serine-rich 1
Gene (Uniprot):SRSF1
Chain IDs:B
Chain Length:115
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1
Mol.Cell 29 563 576 (2008)
PMID: 18342604 DOI: 10.1016/j.molcel.2007.12.017

Abstact

The 2.9 A crystal structure of the core SRPK1:ASF/SF2 complex reveals that the N-terminal half of the basic RS domain of ASF/SF2, which is destined to be phosphorylated, is bound to an acidic docking groove of SRPK1 distal to the active site. Phosphorylation of ASF/SF2 at a single site in the C-terminal end of the RS domain generates a primed phosphoserine that binds to a basic site in the kinase. Biochemical experiments support a directional sliding of the RS peptide through the docking groove to the active site during phosphorylation, which ends with the unfolding of a beta strand of the RRM domain and binding of the unfolded region to the docking groove. We further suggest that the priming of the first serine facilitates directional substrate translocation and efficient phosphorylation.

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Primary Citation of related structures