3BBV image
Deposition Date 2007-11-11
Release Date 2008-10-21
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3BBV
Keywords:
Title:
The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
10.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:tRNA(Phe)
Chain IDs:A (auth: z)
Chain Length:76
Number of Molecules:1
Biological Source:Thermus thermophilus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
4SU A U 4-THIOURIDINE-5'-MONOPHOSPHATE
5MU A U 5-METHYLURIDINE 5'-MONOPHOSPHATE
7MG A G ?
H2U A U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
MIA A A ?
PSU A U PSEUDOURIDINE-5'-MONOPHOSPHATE
Ligand Molecules
Primary Citation
Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15.
J.Mol.Biol. 386 1357 1367 (2009)
PMID: 19013177 DOI: 10.1016/j.jmb.2008.10.079

Abstact

When heat shock prematurely dissociates a translating bacterial ribosome, its 50S subunit is prevented from reinitiating protein synthesis by tRNA covalently linked to the unfinished protein chain that remains threaded through the exit tunnel. Hsp15, a highly upregulated bacterial heat shock protein, reactivates such dead-end complexes. Here, we show with cryo-electron microscopy reconstructions and functional assays that Hsp15 translocates the tRNA moiety from the A site to the P site of stalled 50S subunits. By stabilizing the tRNA in the P site, Hsp15 indirectly frees up the A site, allowing a release factor to land there and cleave off the tRNA. Such a release factor must be stop codon independent, suggesting a possible role for a poorly characterized class of putative release factors that are upregulated by cellular stress, lack a codon recognition domain and are conserved in eukaryotes.

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Primary Citation of related structures