3B9M image
Deposition Date 2007-11-05
Release Date 2008-05-27
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3B9M
Title:
Human serum albumin complexed with myristate, 3'-azido-3'-deoxythymidine (AZT) and salicylic acid
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: )
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.31
R-Value Work:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serum albumin
Gene (Uniprot):ALB
Chain IDs:A
Chain Length:585
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A new drug binding subsite on human serum albumin and drug-drug interaction studied by X-ray crystallography
J.Struct.Biol. 162 40 49 (2008)
PMID: 18258455 DOI: 10.1016/j.jsb.2007.12.004

Abstact

3'-Azido-3'-deoxythymidine (AZT) is the first clinically effective drug for the treatment of human immunodeficiency virus infection. The drug interaction with human serum albumin (HSA) has been an important component in understanding its mechanism of action, especially in drug distribution and in drug-drug interaction on HSA in the case of multi-drug therapy. We present here crystal structures of a ternary HSA-Myr-AZT complex and a quaternary HSA-Myr-AZT-SAL complex (Myr, myristate; SAL, salicylic acid). From this study, a new drug binding subsite on HSA Sudlow site 1 was identified. The presence of fatty acid is needed for the creation of this subsite due to fatty acid induced conformational changes of HSA. Thus, the Sudlow site 1 of HSA can be divided into three non-overlapped subsites: a SAL subsite, an indomethacin subsite and an AZT subsite. Binding of a drug to HSA often influences simultaneous binding of other drugs. From the HSA-Myr-AZT-SAL complex structure, we observed the coexistence of two drugs (AZT and SAL) in Sudlow site 1 and the competition between these two drugs in subdomain IB. These results provide new structural information on HSA-drug interaction and drug-drug interaction on HSA.

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