3B6L image
Deposition Date 2007-10-29
Release Date 2008-07-01
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3B6L
Keywords:
Title:
Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: )
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A
Chain Length:147
Number of Molecules:1
Biological Source:Gallus gallus
Ligand Molecules
Primary Citation
Protecting role of cosolvents in protein denaturation by SDS: a structural study.
BMC Struct.Biol. 8 29 35 (2008)
PMID: 18522744 DOI: 10.1186/1472-6807-8-29

Abstact

BACKGROUND Recently, we reported a unique approach to preserve the activity of some proteins in the presence of the denaturing agent, Sodium Dodecyl Sulfate (SDS). This was made possible by addition of the amphipathic solvent 2,4-Methyl-2-PentaneDiol (MPD), used as protecting but also as refolding agent for these proteins. Although the persistence of the protein activity in the SDS/MPD mixture was clearly established, preservation of their structure was only speculative until now. RESULTS In this paper, a detailed X-ray study addresses the pending question. Crystals of hen egg-white lysozyme were grown for the first time in the presence of MPD and denaturing concentrations of SDS. Depending on crystallization conditions, tetragonal crystals in complex with either SDS or MPD were collected. The conformation of both structures was very similar to the native lysozyme and the obtained complexes of SDS-lysozyme and MPD-lysozyme give some insights in the interplay of protein-SDS and protein-MPD interactions. CONCLUSION This study clearly established the preservation of the enzyme structure in a SDS/MPD mixture. It is hypothesized that high concentrations of MPD would change the properties of SDS and lower or avoid interactions between the denaturant and the protein. These structural data therefore support the hypothesis that MPD avoids disruption of the enzyme structure by SDS and can protect proteins from SDS denaturation.

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