3B6F image
Deposition Date 2007-10-29
Release Date 2007-12-25
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3B6F
Title:
Nucleosome core particle treated with cisplatin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
R-Value Free:
0.40
R-Value Work:
0.33
R-Value Observed:
0.33
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:C (auth: A), G (auth: E)
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:D (auth: B), H (auth: F)
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:E (auth: C), I (auth: G)
Chain Length:128
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:F (auth: D), J (auth: H)
Chain Length:125
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Molecule:147-MER DNA
Chain IDs:A (auth: I)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:147-MER DNA
Chain IDs:B (auth: J)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Site selectivity of platinum anticancer therapeutics
Nat.Chem.Biol. 4 110 112 (2008)
PMID: 18157123 DOI: 10.1038/nchembio.2007.58

Abstact

X-ray crystallographic and biochemical investigation of the reaction of cisplatin and oxaliplatin with nucleosome core particle and naked DNA reveals that histone octamer association can modulate DNA platination. Adduct formation also occurs at specific histone methionine residues, which could serve as a nuclear platinum reservoir influencing adduct transfer to DNA. Our findings suggest that the nucleosome center may provide a favorable target for the design of improved platinum anticancer drugs.

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Primary Citation of related structures