ISDA

Deposition Date 2011-07-13

Release Date 2011-10-26

Last Version Date 2024-10-23

Entry Detail

PDB ID:

3B1T

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Crystal structure of human peptidylarginine deiminase 4 in complex with o-Cl-amidine

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.26

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein-arginine deiminase type-4
Gene (Uniprot):PADI4
Chain IDs:A
Chain Length:671
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UM07 Pfam ID:PF08526, PF08527, PF03068 EC:3.5.3.15

Ligand Molecules

SO4

YCL

Primary Citation

The Development of N-alpha-(2-Carboxyl)benzoyl-N(5)-(2-fluoro-1-iminoethyl)-l-ornithine Amide (o-F-amidine) and N-alpha-(2-Carboxyl)benzoyl-N(5)-(2-chloro-1-iminoethyl)-l-ornithine Amide (o-Cl-amidine) As Second Generation Protein Arginine Deiminase (PAD) Inhibitors

Causey, C.P, Jones, J.E, Slack, J.L, Kamei, D, Jones Jr, L.E, Subramanian, V, Knuckley, B, Ebrahimi, P, Chumanevich, A.A, Luo, Y, Hashimoto, H, Sato, M, Hofseth, L.J, Thompson, P.R.Show

J.Med.Chem. 54 6919 6935 (2011)

PMID: 21882827 DOI: 10.1021/jm2008985

Primary Citation of related structures