3AYR image
Entry Detail
PDB ID:
3AYR
Keywords:
Title:
GH5 endoglucanase EglA from a ruminal fungus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-05-16
Release Date:
2011-11-02
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endoglucanase
Chain IDs:A
Chain Length:376
Number of Molecules:1
Biological Source:Piromyces rhizinflatus
Primary Citation
Substrate binding of a GH5 endoglucanase from the ruminal fungus Piromyces rhizinflata.
Acta Crystallogr.,Sect.F 67 1189 1194 (2011)
PMID: 22102024 DOI: 10.1107/S1744309111032428

Abstact

The endoglucanase EglA from Piromyces rhizinflata found in cattle stomach belongs to the GH5 family of glycoside hydrolases. The crystal structure of the catalytic domain of EglA shows the (β/α)(8)-barrel fold typical of GH5 enzymes. Adjacent to the active site of EglA, a loop containing a disulfide bond not found in other similar structures may participate in substrate binding. Because the active site was blocked by the N-terminal His tag of a neighbouring protein molecule in the crystal, enzyme-substrate complexes could not be obtained by soaking but were prepared by cocrystallization. The E154A mutant structure with a cellotriose bound to the -3, -2 and -1 subsites shows an extensive hydrogen-bonding network between the enzyme and the substrate, along with a stacking interaction between Trp44 and the -3 sugar. A possible dimer was observed in the crystal structure, but retention of activity in the E242A mutant suggested that the enzyme probably does not function as a dimer in solution. On the other hand, the first 100 amino acids encoded by the original cDNA fragment are very similar to those in the last third of the (β/α)(8)-barrel fold, indicating that EglA comprises at least two catalytic domains acting in tandem.

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