ISDA

Deposition Date 2011-02-15

Release Date 2011-09-14

Last Version Date 2023-11-01

Entry Detail

PDB ID:

3AUQ

Keywords:

TRANSCRIPTION

Title:

Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2alpha-methyl-19-norvitamin D3

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.64 Å

R-Value Free:

0.28

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Vitamin D3 receptor
Gene (Uniprot):VDR
Mutations:DEL(165-215) mutant
Chain IDs:A
Chain Length:263
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P11473 Pfam ID:PF00104

Ligand Molecules

CA9

Primary Citation

Development of 14-epi-19-nortachysterol and its unprecedented binding configuration for the human vitamin D receptor

Sawada, D, Tsukuda, Y, Saito, H, Kakuda, S, Takimoto-Kamimura, M, Ochiai, E, Takenouchi, K, Kittaka, A.Show

J.Am.Chem.Soc. 133 7215 7221 (2011)

PMID: 21500802 DOI: 10.1021/ja201481j

Abstact

In the study of the synthesis of 14-epi-19-norprevitamin D(3), we found 14-epi-19-nortachysterol derivatives through C6,7-cis/trans isomerization. We also succeeded in their chemical synthesis and revealed their marked stability and potent VDR binding affinity. To the best of our knowledge, this is the first isolation of stable tachysterol analogues. Surprisingly, 14-epi-19-nortachysterol derivatives exhibited an unprecedented binding configurations for the ligand binding pocket in hVDR, C5,6-s-trans and C7,8-s-trans triene configurations, which were opposite the natural C7,8-ene-configuration of 1α,25(OH)(2)D(3).

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Primary Citation of related structures