3AQ4 image
Entry Detail
PDB ID:
3AQ4
Keywords:
Title:
Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-10-25
Release Date:
2011-01-26
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ADP-ribosylation factor 1
Chain IDs:A, B
Chain Length:184
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b
Genes Dev. 25 64 76 (2011)
PMID: 21156810 DOI: 10.1101/gad.1985511

Abstact

The Agrobacterium Ti plasmid (T-DNA) 6b proteins interact with many different host proteins implicated in plant cell proliferation. Here, we show that Arabidopsis plants overexpressing 6b display microRNA (miRNA) deficiency by directly targeting SERRATE and AGO1 via a specific loop fragment (residues 40-55). In addition, we report the crystal structures of Agrobacterium tumefaciens AK6b at 2.1 Å, Agrobacterium vitis AB6b at 1.65 Å, and Arabidopsis ADP ribosylation factor (ARF) at 1.8 Å. The 6b structure adopts an ADP-ribosylating toxin fold closely related to cholera toxin. In vitro ADP ribosylation analysis demonstrates that 6b represents a new toxin family, with Tyr 66, Thr 93, and Tyr 153 as the ADP ribosylation catalytic residues in the presence of Arabidopsis ARF and GTP. Our work provides molecular insights, suggesting that 6b regulates plant cell growth by the disturbance of the miRNA pathway through its ADP ribosylation activity.

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