3ALA image
Deposition Date 2010-07-29
Release Date 2010-12-15
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3ALA
Keywords:
Title:
Crystal structure of vascular adhesion protein-1 in space group C2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Membrane primary amine oxidase
Gene (Uniprot):AOC3
Chain IDs:A, B, C, D, E, F, G
Chain Length:748
Number of Molecules:7
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
TPQ A TYR ?
Primary Citation
A new crystal form of human vascular adhesion protein 1
Acta Crystallogr.,Sect.F 66 1572 1578 (2010)
PMID: 21139198 DOI: 10.1107/S1744309110041515

Abstact

Human vascular adhesion protein 1 (VAP-1) is involved in lymphocyte-endothelial cell adhesion and has been implicated in many human inflammatory diseases. VAP-1 is a member of the copper amine oxidase family of enzymes with a trihydroxyphenylalanine quinone (TPQ) cofactor. Previously characterized crystals of VAP-1 suffered from anisotropy and contained disordered regions; in addition, one form was consistently twinned. In an effort to grow crystals that diffracted to higher resolution for inhibitor-binding studies, a construct with an N-terminal deletion was made and expressed in the Chinese hamster ovary (CHO) glycosylation mutant cell line Lec8. Screening produced crystals that displayed some anisotropy and contained seven molecules per asymmetric unit. These crystals belonged to space group C2, with unit-cell parameters a=394.5, b=115.8, c=179.3 Å, β=112.3°. The structure was refined to a resolution of 2.9 Å, with Rcryst and Rfree values of 0.250 and 0.286, respectively.

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Primary Citation of related structures