3AB0 image
Deposition Date 2009-11-28
Release Date 2010-12-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3AB0
Keywords:
Title:
Crystal structure of complex of the Bacillus anthracis major spore surface protein BclA with ScFv antibody fragment
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.09 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BclA protein
Gene (Uniprot):bclA
Chain IDs:A, D
Chain Length:136
Number of Molecules:2
Biological Source:Bacillus anthracis
Polymer Type:polypeptide(L)
Molecule:antibody ScFv fragment, heavy chain
Chain IDs:B, E
Chain Length:117
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:antibody ScFv fragment, light chain
Chain IDs:C, F
Chain Length:106
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Isolation, kinetic analysis, and structural characterization of an antibody targeting the Bacillus anthracis major spore surface protein BclA.
Proteins 79 1306 1317 (2011)
PMID: 21322055 DOI: 10.1002/prot.22971

Abstact

One method of laboratory- or field-based testing for anthrax is detection of Bacillus anthracis spores by high-affinity, high specificity binding reagents. From a pool of monoclonal antibodies, we selected one such candidate (A4D11) with high affinity for tBclA, a truncated version of the B. anthracis exosporium protein BclA. Kinetic analysis utilising both standard and kinetic titration on a Biacore biosensor indicated antibody affinities in the 300 pM range for recombinant tBclA, and the A4D11 antibody was also re-formatted into scFv configuration with no loss of affinity. However, assays against B. anthracis and related Bacilli species showed limited binding of intact spores as well as significant cross-reactivity between species. These results were rationalized by determination of the three-dimensional crystallographic structure of the scFv-tBclA complex. A4D11 binds the side of the tBclA trimer, contacting a face of the antigen normally packed against adjacent trimers within the exosporium structure; this inter-spore interface is highly conserved between Bacilli species. Our results indicate the difficulty of generating a high-affinity antibody to differentiate between the highly conserved spore structures of closely related species, but suggest the possibility of future structure-based antibody design for this difficult target.

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Primary Citation of related structures