3A5V image
Deposition Date 2009-08-12
Release Date 2009-08-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3A5V
Keywords:
Title:
Crystal structure of alpha-galactosidase I from Mortierella vinacea
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-galactosidase
Chain IDs:A
Chain Length:397
Number of Molecules:1
Biological Source:Umbelopsis vinacea
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea
Biosci.Biotechnol.Biochem. 73 2360 2364 (2009)
PMID: 19809163 DOI: 10.1271/bbb.90604

Abstact

The crystal structure of Umbelopsis vinacea alpha-galactosidase I, which belongs to glycoside hydrolase family 27, was determined at 2.0 A resolution. The monomer structure was well conserved with those of glycoside hydrolase family 27 enzymes. The biological tetramer structure of this enzyme was constructed by the crystallographic 4-fold symmetry, and tetramerization appeared to be caused by three inserted peptides that were involved in the tetramer interface. The quaternary structure indicated that the substrate specificity of this enzyme might be related to the tetramer formation. Three N-glycosylated sugar chains were observed, and their structures were found to be of the high-mannose type.

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Primary Citation of related structures