3A57 image
Deposition Date 2009-08-03
Release Date 2010-03-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3A57
Keywords:
Title:
Crystal structure of Thermostable Direct Hemolysin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thermostable direct hemolysin 2
Gene (Uniprot):tdh2
Chain IDs:A
Chain Length:165
Number of Molecules:1
Biological Source:Vibrio parahaemolyticus
Primary Citation
Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem. 285 16267 16274 (2010)
PMID: 20335168 DOI: 10.1074/jbc.M109.074526

Abstact

Thermostable direct hemolysin (TDH) is a major virulence factor of Vibrio parahaemolyticus that causes pandemic foodborne enterocolitis mediated by seafood. TDH exists as a tetramer in solution, and it possesses extreme hemolytic activity. Here, we present the crystal structure of the TDH tetramer at 1.5 A resolution. The TDH tetramer forms a central pore with dimensions of 23 A in diameter and approximately 50 A in depth. Pi-cation interactions between protomers comprising the tetramer were indispensable for hemolytic activity of TDH. The N-terminal region was intrinsically disordered outside of the pore. Molecular dynamic simulations suggested that water molecules permeate freely through the central and side channel pores. Electron micrographs showed that tetrameric TDH attached to liposomes, and some of the tetramer associated with liposome via one protomer. These findings imply a novel membrane attachment mechanism by a soluble tetrameric pore-forming toxin.

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