3A3Y image
Deposition Date 2009-06-23
Release Date 2009-09-08
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3A3Y
Title:
Crystal structure of the sodium-potassium pump with bound potassium and ouabain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Na, K-ATPase alpha subunit
Gene (Uniprot):atn1
Chain IDs:A
Chain Length:1028
Number of Molecules:1
Biological Source:Squalus acanthias
Polymer Type:polypeptide(L)
Molecule:NA+,K+-ATPASE BETA SUBUNIT
Chain IDs:B
Chain Length:305
Number of Molecules:1
Biological Source:SQUALUS ACANTHIAS
Polymer Type:polypeptide(L)
Molecule:Phospholemman-like protein
Gene (Uniprot):fxyd10
Chain IDs:C (auth: G)
Chain Length:74
Number of Molecules:1
Biological Source:Squalus acanthias
Primary Citation
Crystal structure of the sodium-potassium pump (Na+,K+-ATPase) with bound potassium and ouabain.
Proc.Natl.Acad.Sci.USA 106 13742 13747 (2009)
PMID: 19666591 DOI: 10.1073/pnas.0907054106

Abstact

The sodium-potassium pump (Na(+),K(+)-ATPase) is responsible for establishing Na(+) and K(+) concentration gradients across the plasma membrane and therefore plays an essential role in, for instance, generating action potentials. Cardiac glycosides, prescribed for congestive heart failure for more than 2 centuries, are efficient inhibitors of this ATPase. Here we describe a crystal structure of Na(+),K(+)-ATPase with bound ouabain, a representative cardiac glycoside, at 2.8 A resolution in a state analogous to E2.2K(+).Pi. Ouabain is deeply inserted into the transmembrane domain with the lactone ring very close to the bound K(+), in marked contrast to previous models. Due to antagonism between ouabain and K(+), the structure represents a low-affinity ouabain-bound state. Yet, most of the mutagenesis data obtained with the high-affinity state are readily explained by the present crystal structure, indicating that the binding site for ouabain is essentially the same. According to a homology model for the high affinity state, it is a closure of the binding cavity that confers a high affinity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures