3A2O image
Deposition Date 2009-05-26
Release Date 2010-03-02
Last Version Date 2024-05-29
Entry Detail
PDB ID:
3A2O
Title:
Crystal Structure of HIV-1 Protease Complexed with KNI-1689
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.88 Å
R-Value Free:
0.11
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEASE
Mutations:Q7K, L33I, L63I C67A, C95A
Chain IDs:A, B
Chain Length:99
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Peptide-like Molecules
PRD_000584
Primary Citation
Small-sized human immunodeficiency virus type-1 protease inhibitors containing allophenylnorstatine to explore the S2' pocket.
J.Med.Chem. 52 7604 7617 (2009)
PMID: 19954246 DOI: 10.1021/jm9005115

Abstact

A series of HIV protease inhibitor based on the allophenylnorstatine structure with various P(2)' moieties were synthesized. Among these analogues, we discovered that a small allyl group would maintain potent enzyme inhibitory activity compared to the o-methylbenzyl moiety in clinical candidate 1 (KNI-764, also known as JE-2147, AG-1776, or SM-319777). Introduction of an anilinic amino group to 2 (KNI-727) improved water-solubility and anti-HIV-1 activity. X-ray crystallographic analysis of 13k (KNI-1689) with a beta-methallyl group at P(2)' position revealed hydrophobic interactions with Ala28, Ile84, and Ile50' similar to that of 1. The presence of an additional methyl group on the allyl group in compound 13k significantly increased anti-HIV activity over 1 while providing a rational drug design for structural minimization and improving membrane permeability.

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Primary Citation of related structures