2voy image
Deposition Date 2008-02-25
Release Date 2009-05-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2VOY
Keywords:
Title:
CryoEM model of CopA, the copper transporting ATPase from Archaeoglobus fulgidus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
18.00 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:POTENTIAL COPPER-TRANSPORTING ATPASE
Gene (Uniprot):copA
Chain IDs:A
Chain Length:80
Number of Molecules:1
Biological Source:BACILLUS SUBTILIS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:B
Chain Length:42
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:C
Chain Length:22
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:D
Chain Length:23
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:E
Chain Length:30
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:CATION-TRANSPORTING ATPASE, P-TYPE
Gene (Uniprot):copA
Chain IDs:F
Chain Length:113
Number of Molecules:1
Biological Source:ARCHAEOGLOBUS FULGIDUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:G
Chain Length:36
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:H
Chain Length:48
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:CATION-TRANSPORTING ATPASE
Chain IDs:I
Chain Length:128
Number of Molecules:1
Biological Source:ARCHAEOGLOBUS FULGIDUS
Polymer Type:polypeptide(L)
Molecule:CATION-TRANSPORTING ATPASE
Gene (Uniprot):copA
Chain IDs:J
Chain Length:118
Number of Molecules:1
Biological Source:ARCHAEOGLOBUS FULGIDUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:K
Chain Length:32
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:L
Chain Length:21
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE I MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structure of a Copper Pump Suggests a Regulatory Role for its Metal-Binding Domain.
Structure 16 976 ? (2008)
PMID: 18547529 DOI: 10.1016/J.STR.2008.02.025

Abstact

P-type ATPases play an important role in Cu homeostasis, which provides sufficient Cu for metalloenzyme biosynthesis but prevents oxidative damage of free Cu to the cell. The P(IB) group of P-type ATPases includes ATP-dependent pumps of Cu and other transition metal ions, and it is distinguished from other family members by the presence of N-terminal metal-binding domains (MBD). We have determined structures of two constructs of a Cu pump from Archaeoglobus fulgidus (CopA) by cryoelectron microscopy of tubular crystals, which reveal the overall architecture and domain organization of the molecule. By comparing these structures, we localized its N-terminal MBD within the cytoplasmic domains that use ATP hydrolysis to drive the transport cycle. We have built a pseudoatomic model by fitting existing crystallographic structures into the cryoelectron microscopy maps for CopA, which suggest a Cu-dependent regulatory role for the MBD.

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Disease

Primary Citation of related structures