2qpe image
Deposition Date 2007-07-23
Release Date 2007-12-11
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2QPE
Keywords:
Title:
An unexpected outcome of surface-engineering an integral membrane protein: Improved crystallization of cytochrome ba3 oxidase from Thermus thermophilus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):cbaA
Mutations:K258R
Chain IDs:A
Chain Length:568
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):cbaB
Mutations:E4Q
Chain IDs:B
Chain Length:168
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypeptide 2A
Gene (Uniprot):cbaD
Chain IDs:C
Chain Length:34
Number of Molecules:1
Biological Source:Thermus thermophilus
Primary Citation
An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.
Acta Crystallogr.,Sect.F 63 1029 1034 (2007)
PMID: 18084085 DOI: 10.1107/S1744309107054176

Abstact

Past work has shown that it is feasible to mutate surface residues of soluble proteins and to a lesser extent membrane proteins in order to improve their crystallization behavior. Described here is a successful application of this approach to the integral membrane protein Thermus thermophilus cytochrome ba(3) oxidase. Two mutant forms of this enzyme (I-K258R and I-K258R/II-E4Q) were created in which symmetrical crystal contacts within crystals of wild-type enzyme were modified. These mutant proteins had greatly shortened crystallization times, decreasing from approximately 30 d for the wild type to 1-3 d for the mutants, and crystallization was highly reproducible. Native-like proteins crystallize in space group P4(3)2(1)2, whereas the mutant proteins crystallize in space group P4(1)2(1)2 with a different packing arrangement. Crystals of the P4(3)2(1)2 form occasionally diffracted to 2.4-2.3 A resolution following controlled dehydration, while those of the P4(1)2(1)2 form routinely diffracted to between 3.0 and 2.6 A for crystals that had been cryoprotected but not dehydrated.

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Primary Citation of related structures